chore: Update makefiles and doxygen

Signed-off-by: EnderIce2 <enderice2@protonmail.com>

Doxyfile

@@ -44,14 +44,14 @@ PROJECT_NUMBER         = 1.0.0
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          = "Opeating System from scratch made in C and C++"
+PROJECT_BRIEF          = "Full Documentation"
 
 # With the PROJECT_LOGO tag one can specify a logo or an icon that is included
 # in the documentation. The maximum height of the logo should not exceed 55
 # pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
 # the logo to the output directory.
 
-PROJECT_LOGO           =
+PROJECT_LOGO           = tools/doxygen/favicon.ico
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
@@ -246,7 +246,7 @@ INHERIT_DOCS           = YES
 # of the file/class/namespace that contains it.
 # The default value is: NO.
 
-SEPARATE_MEMBER_PAGES  = YES
+SEPARATE_MEMBER_PAGES  = NO
 
 # The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
 # uses this value to replace tabs by spaces in code fragments.
@@ -424,7 +424,7 @@ SUBGROUPING            = YES
 # SEPARATE_MEMBER_PAGES.
 # The default value is: NO.
 
-INLINE_GROUPED_CLASSES = YES
+INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
 # with only public data fields or simple typedef fields will be shown inline in
@@ -614,7 +614,7 @@ HIDE_COMPOUND_REFERENCE= NO
 # the files that are included by a file in the documentation of that file.
 # The default value is: YES.
 
-SHOW_INCLUDE_FILES     = YES
+SHOW_INCLUDE_FILES     = NO
 
 # If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
 # grouped member an include statement to the documentation, telling the reader
@@ -794,7 +794,7 @@ CITE_BIB_FILES         =
 # messages are off.
 # The default value is: NO.
 
-QUIET                  = NO
+QUIET                  = YES
 
 # The WARNINGS tag can be used to turn on/off the warning messages that are
 # generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
@@ -864,7 +864,14 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = Kernel Userspace Drivers tools/doxymds/main.md
+INPUT                  = tools/doxygen/index.md \
+                         tools/doxygen/api.md \
+                         tools/doxygen/develop.md \
+                         README \
+                         Userspace/README.md \
+                         Drivers/README.md \
+                         Kernel/README.md \
+                         Kernel/include/interface
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -955,7 +962,7 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = .vscode tools
+EXCLUDE                = .vscode .github
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1064,7 +1071,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = tools/doxymds/main.md
+USE_MDFILE_AS_MAINPAGE = tools/doxygen/index.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing
@@ -1224,7 +1231,7 @@ GENERATE_HTML          = YES
 # The default directory is: html.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_OUTPUT            = doxygen-doc/fulldoc
+HTML_OUTPUT            = doxygen-doc/docs
 
 # The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
 # generated HTML page (for example: .htm, .php, .asp).
@@ -1251,7 +1258,7 @@ HTML_FILE_EXTENSION    = .html
 # of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_HEADER            =
+HTML_HEADER            = tools/doxygen/header.html
 
 # The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
 # generated HTML page. If the tag is left blank doxygen will generate a standard
@@ -1286,7 +1293,8 @@ HTML_STYLESHEET        =
 # list). For an example see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_EXTRA_STYLESHEET  = tools/doxygen-awesome.css tools/custom.css
+HTML_EXTRA_STYLESHEET  = tools/doxygen/theme/doxygen-awesome.css \
+                         tools/doxygen/custom.css
 
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
@@ -1296,7 +1304,11 @@ HTML_EXTRA_STYLESHEET  = tools/doxygen-awesome.css tools/custom.css
 # files will be copied as-is; there are no commands or markers available.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_EXTRA_FILES       =
+HTML_EXTRA_FILES       = tools/doxygen/theme/doxygen-awesome-darkmode-toggle.js \
+                         tools/doxygen/theme/doxygen-awesome-fragment-copy-button.js \
+                         tools/doxygen/theme/doxygen-awesome-paragraph-link.js \
+                         tools/doxygen/theme/doxygen-awesome-interactive-toc.js \
+                         tools/doxygen/theme/doxygen-awesome-tabs.js
 
 # The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
 # will adjust the colors in the style sheet and background images according to
@@ -1335,7 +1347,7 @@ HTML_COLORSTYLE_GAMMA  = 80
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_TIMESTAMP         = NO
+HTML_TIMESTAMP         = YES
 
 # If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
 # documentation will contain a main index with vertical navigation menus that
@@ -2071,7 +2083,7 @@ MAN_OUTPUT             = man
 # The default value is: .3.
 # This tag requires that the tag GENERATE_MAN is set to YES.
 
-MAN_EXTENSION          = .3
+MAN_EXTENSION          = .2
 
 # The MAN_SUBDIR tag determines the name of the directory created within
 # MAN_OUTPUT in which the man pages are placed. If defaults to man followed by