diff --git a/Doxyfile b/Doxyfile
index 86c9fe1..76a8caf 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -864,7 +864,7 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = Userspace Doxygen_README.md
+INPUT                  = Userspace tools/Doxygen_README.md
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1064,7 +1064,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = Doxygen_README.md
+USE_MDFILE_AS_MAINPAGE = tools/Doxygen_README.md
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing
@@ -1286,7 +1286,7 @@ HTML_STYLESHEET        =
 # list). For an example see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_EXTRA_STYLESHEET  =
+HTML_EXTRA_STYLESHEET  = tools/doxygen-awesome.css tools/custom.css
 
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note